Discover New NEON Terrestrial Giant Viruses and Virophages

The discovery of giant viruses with genomes harboring up to the current record of 2,978 genes (bigger than some bacteria) has changed the boundaries of life. Giant viruses are part of the phylum Nucleocytoviricota whose members include the causative agents of smallpox and swine hemorrhagic fever, but provide benefits through biocontrol of insects, mitigating toxic algal blooms and enzymes for biotechnology. Virophages are much smaller viruses that inhibit the replication of giant viruses. We are developing and applying bioinformatic methods to discover viruses in metagenomes from National Ecological Observatory Network (NEON), including a new sampling effort in the Harvard Forest and the North Quabbin Watershed in Massachusetts. How giant are giant viruses?...see the images in our preprint "Amazing structural diversity of giant virus-like particles in forest soil"

Name of research group, project, or lab
Blanchard Research Group
Why participate in this opportunity?

This is paramount in understanding how giant viruses adapt to new hosts and environmental change. Our laboratory has collaborations with other universities, research institutes, national laboratories and the Massachusetts biotech industry.  Through this network students will learn about different career opportunities. There is a possibility of international travel to work with our collaborators. Our laboratory group enjoys the perspectives of students from diverse life experiences and an inclusive environment!

Representative publication or further information
Logistics Information:
Subject Category
Biochemistry & Molecular Biology
Bioinformatics/Data Science
Biology
Ecology
Student ranks applicable
Freshman
Sophomore
Junior
Senior
Student qualifications

In the spring semester the project will involve working with big metagenomic data sets on the UMass Unity high performance computing system. Familiarity with working on the Unix command line and R and/or Python programming experience will be necessary. Students who have taken the Phage Bioinformatics course are encourage to apply even if they do not yet have programming experience.  

In the spring we are also starting up a project to cultivate giant viruses in the laboratory. If you are interested in continuing to do bioinformatics or are interested in a more laboratory-based experience we would be interested in working with you during summer 2025 and beyond through the LEE-SIP program. The priority deadline for the LEE-SIP program is Jan 9, 2025. 

Time commitment
8-10 h/wk
Position Types and Compensation
Research - Ind. Study Credit
Number of openings
2
Techniques learned

Researchers on this project will learn many computational tools and methods related to metagenomics, virology, statistics and data visualization.

Project start
2/2025
Contact Information:
Mentors
jlb@umass.edu
Principal Investigator
vburman@umass.edu
Name of project director or principal investigator
Jeffrey Blanchard
Email address of project director or principal investigator
jlb@umass.edu
2 sp. | 39 appl.
Hours
8-10 h/wk
Project categories
Biochemistry & Molecular Biology (+3)
Biochemistry & Molecular BiologyBioinformatics/Data ScienceBiologyEcology